Index

_

__getitem__() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.mesh_series.PVDDataItems method) (ogstools.meshlib.MeshSeries method) (ogstools.meshlib.xdmf_reader.BinaryDataItem method) (ogstools.meshlib.xdmf_reader.DataItem method) (ogstools.meshlib.xdmf_reader.DataItems method) (ogstools.meshlib.xdmf_reader.H5DataItem method) (ogstools.meshlib.xdmf_reader.XMLDataItem method) (ogstools.variables.matrix.Matrix method) (ogstools.variables.vector.Vector method) (ogstools.variables.vector.VectorList method) __init__() (ogstools.logparser.regexes.AssemblyTime method) (ogstools.logparser.regexes.ComponentConvergenceCriterion method) (ogstools.logparser.regexes.CouplingIterationConvergence method) (ogstools.logparser.regexes.CriticalMessage method) (ogstools.logparser.regexes.DirichletTime method) (ogstools.logparser.regexes.ErrorMessage method) (ogstools.logparser.regexes.GenericCodePoint method) (ogstools.logparser.regexes.Iteration method) (ogstools.logparser.regexes.IterationTime method) (ogstools.logparser.regexes.LinearSolverTime method) (ogstools.logparser.regexes.Log method) (ogstools.logparser.regexes.MeshReadTime method) (ogstools.logparser.regexes.MPIProcess method) (ogstools.logparser.regexes.PhaseFieldEnergyVar method) (ogstools.logparser.regexes.SimulationExecutionTime method) (ogstools.logparser.regexes.TimeStep method) (ogstools.logparser.regexes.TimeStepConvergenceCriterion method) (ogstools.logparser.regexes.TimeStepFinishedTime method) (ogstools.logparser.regexes.TimeStepOutputTime method) (ogstools.logparser.regexes.TimeStepSolutionTime method) (ogstools.logparser.regexes.TimeStepSolutionTimeCoupledScheme method) (ogstools.logparser.regexes.TimeStepStartTime method) (ogstools.logparser.regexes.WarningMessage method) (ogstools.meshlib.boundary.Layer method) (ogstools.meshlib.boundary.LocationFrame method) (ogstools.meshlib.boundary.Raster method) (ogstools.meshlib.boundary_set.LayerSet method) (ogstools.meshlib.boundary_subset.Surface method) (ogstools.meshlib.gmsh_meshing.BHE method) (ogstools.meshlib.gmsh_meshing.Groundwater method) (ogstools.meshlib.Layer method) (ogstools.meshlib.LayerSet method) (ogstools.meshlib.LocationFrame method) (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.mesh_series.PVDDataItems method) (ogstools.meshlib.MeshSeries method) (ogstools.meshlib.Raster method) (ogstools.meshlib.region.region.RegionSet method) (ogstools.meshlib.region.RegionSet method) (ogstools.meshlib.Surface method) (ogstools.meshlib.xdmf_reader.BinaryDataItem method) (ogstools.meshlib.xdmf_reader.DataItems method) (ogstools.meshlib.xdmf_reader.H5DataItem method) (ogstools.meshlib.xdmf_reader.XDMFReader method) (ogstools.meshlib.xdmf_reader.XMLDataItem method) (ogstools.ogs6py.build_tree.BuildTree method) (ogstools.ogs6py.curves.Curves method) (ogstools.ogs6py.display.Display method) (ogstools.ogs6py.geo.Geo method) (ogstools.ogs6py.linsolvers.LinSolvers method) (ogstools.ogs6py.local_coordinate_system.LocalCoordinateSystem method) (ogstools.ogs6py.media.Media method) (ogstools.ogs6py.mesh.Mesh method) (ogstools.ogs6py.nonlinsolvers.NonLinSolvers method) (ogstools.ogs6py.parameters.Parameters method) (ogstools.ogs6py.processes.Processes method) (ogstools.ogs6py.processvars.ProcessVars method) (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) (ogstools.ogs6py.properties.Property method) (ogstools.ogs6py.properties.PropertySet method) (ogstools.ogs6py.properties.Value method) (ogstools.ogs6py.python_script.PythonScript method) (ogstools.ogs6py.timeloop.TimeLoop method) (ogstools.physics.nuclearwasteheat.nuclearwaste.NuclearWaste method) (ogstools.physics.nuclearwasteheat.nuclearwaste.Repository method) (ogstools.plot.plot_setup.PlotSetup method) (ogstools.variables.matrix.Matrix method) (ogstools.variables.variable.Scalar method) (ogstools.variables.variable.Variable method) (ogstools.variables.vector.Vector method) (ogstools.variables.vector.VectorList method)

A

adaptive_rounding() (in module ogstools.plot.levels) add_basis_vec() (ogstools.ogs6py.local_coordinate_system.LocalCoordinateSystem method) add_bc() (ogstools.ogs6py.processvars.ProcessVars method) add_bhe_component() (ogstools.ogs6py.processes.Processes method) add_bhe_type() (ogstools.ogs6py.processes.Processes method) add_block() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) add_colorbars() (in module ogstools.plot.contourplots) add_curve() (ogstools.ogs6py.curves.Curves method) add_element() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) add_geometry() (ogstools.ogs6py.geo.Geo method) add_global_process_coupling() (ogstools.ogs6py.timeloop.TimeLoop method) add_grid_spacing() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) add_include() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) add_lin_solver() (ogstools.ogs6py.linsolvers.LinSolvers method) add_mesh() (ogstools.ogs6py.mesh.Mesh method) add_non_lin_solver() (ogstools.ogs6py.nonlinsolvers.NonLinSolvers method) add_output() (ogstools.ogs6py.timeloop.TimeLoop method) add_output_pair() (ogstools.ogs6py.timeloop.TimeLoop method) add_parameter() (ogstools.ogs6py.parameters.Parameters method) add_process() (ogstools.ogs6py.timeloop.TimeLoop method) add_process_variable() (ogstools.ogs6py.processes.Processes method) add_property() (ogstools.ogs6py.media.Media method) add_secondary_variable() (ogstools.ogs6py.processes.Processes method)

add_st() (ogstools.ogs6py.processvars.ProcessVars method) add_surfaceflux() (ogstools.ogs6py.processes.Processes method) add_time_stepping_pair() (ogstools.ogs6py.timeloop.TimeLoop method) aggregate() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) aggregate_over_domain() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) aggregate_over_time() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) analysis_convergence_coupling_iteration() (in module ogstools.logparser) (in module ogstools.logparser.common_ogs_analyses) analysis_convergence_newton_iteration() (in module ogstools.logparser) (in module ogstools.logparser.common_ogs_analyses) analysis_simulation() (in module ogstools.logparser) (in module ogstools.logparser.common_ogs_analyses) analysis_simulation_termination() (in module ogstools.logparser) (in module ogstools.logparser.common_ogs_analyses) analysis_time_step() (in module ogstools.logparser) (in module ogstools.logparser.common_ogs_analyses) animate() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) as_gml() (ogstools.meshlib.boundary.LocationFrame method) (ogstools.meshlib.LocationFrame method) as_vtu() (ogstools.meshlib.boundary.Raster method) (ogstools.meshlib.Raster method) assembly_time (ogstools.logparser.regexes.AssemblyTime attribute) AssemblyTime (class in ogstools.logparser.regexes) assign_bulk_ids() (in module ogstools.feflowlib.tools)

B

begin (ogstools.meshlib.gmsh_meshing.Groundwater attribute) BHE (class in ogstools.meshlib.gmsh_meshing) bilinear_cmap (ogstools.variables.variable.Variable attribute) BinaryDataItem (class in ogstools.meshlib.xdmf_reader) borehole_radius (ogstools.meshlib.gmsh_meshing.BHE attribute) bottom (ogstools.meshlib.boundary.Layer attribute) (ogstools.meshlib.Layer attribute) Boundary (class in ogstools.meshlib) (class in ogstools.meshlib.boundary)

BoundarySet (class in ogstools.meshlib.boundary_set) bounds() (ogstools.meshlib.boundary_set.BoundarySet method) (ogstools.meshlib.boundary_set.LayerSet method) (ogstools.meshlib.LayerSet method) box_boundaries() (ogstools.meshlib.region.region.RegionSet method) (ogstools.meshlib.region.RegionSet method) BuildTree (class in ogstools.ogs6py.build_tree)

C

categoric (ogstools.variables.variable.Variable attribute) clear() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) cli() (in module ogstools.meshlib.shp2msh_cli) closest_timestep() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) closest_timevalue() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) cmap (ogstools.variables.variable.Variable attribute) color (ogstools.variables.variable.Variable attribute) color_twin_axes() (in module ogstools.plot.utils) combine_material_properties() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools) combined_colorbar (ogstools.plot.plot_setup.PlotSetup attribute) combined_levels() (in module ogstools.plot.levels) component (ogstools.logparser.regexes.ComponentConvergenceCriterion attribute) component_transport() (in module ogstools.feflowlib) (in module ogstools.feflowlib.templates) ComponentConvergenceCriterion (class in ogstools.logparser.regexes) compute_levels() (in module ogstools.plot) (in module ogstools.plot.levels) contourf() (in module ogstools.plot) (in module ogstools.plot.contourplots) contrast_color() (in module ogstools.plot.utils)

convergence_metrics() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) convergence_metrics_evolution() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) convergence_order() (in module ogstools.studies.convergence.convergence) convert_geometry_mesh() (in module ogstools.feflowlib) convert_properties_mesh() (in module ogstools.feflowlib) coupling_iteration (ogstools.logparser.regexes.TimeStepSolutionTimeCoupledScheme attribute) coupling_iteration_process (ogstools.logparser.regexes.CouplingIterationConvergence attribute) CouplingIterationConvergence (class in ogstools.logparser.regexes) create_raster() (ogstools.meshlib.boundary.Layer method) (ogstools.meshlib.boundary_set.LayerSet method) (ogstools.meshlib.Layer method) (ogstools.meshlib.LayerSet method) create_raster_file() (ogstools.meshlib.boundary_subset.Surface method) (ogstools.meshlib.Surface method) create_rasters() (ogstools.meshlib.boundary_set.LayerSet method) (ogstools.meshlib.LayerSet method) CriticalMessage (class in ogstools.logparser.regexes) CriticalType (class in ogstools.logparser.regexes) cuboid() (in module ogstools.meshlib) (in module ogstools.meshlib.gmsh_meshing) Curves (class in ogstools.ogs6py.curves) custom_cmap (ogstools.plot.plot_setup.PlotSetup attribute)

D

data() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) data_name (ogstools.variables.variable.Variable attribute) data_unit (ogstools.variables.variable.Variable attribute) DataItem (class in ogstools.meshlib.xdmf_reader) DataItems (class in ogstools.meshlib.xdmf_reader) deactivate_cells() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools) deactivate_parameter() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) deactivate_property() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) decay_consts (ogstools.physics.nuclearwasteheat.nuclearwaste.NuclearWaste attribute) depth() (in module ogstools.meshlib.geo) (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) det (ogstools.variables.matrix.Matrix property) det() (in module ogstools.variables.tensor_math) deviator (ogstools.variables.matrix.Matrix property) deviator() (in module ogstools.variables.tensor_math) deviator_invariant_1 (ogstools.variables.matrix.Matrix property) deviator_invariant_1() (in module ogstools.variables.tensor_math) deviator_invariant_2 (ogstools.variables.matrix.Matrix property) deviator_invariant_2() (in module ogstools.variables.tensor_math) deviator_invariant_3 (ogstools.variables.matrix.Matrix property) deviator_invariant_3() (in module ogstools.variables.tensor_math) difference (ogstools.variables.variable.Variable property)

difference() (in module ogstools.meshlib) (in module ogstools.meshlib.data_processing) (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) difference_matrix() (in module ogstools.meshlib) (in module ogstools.meshlib.data_processing) difference_pairwise() (in module ogstools.meshlib) (in module ogstools.meshlib.data_processing) dilatancy_alkan() (in module ogstools.variables.mesh_dependent) dilatancy_critescu() (in module ogstools.variables.mesh_dependent) dim() (ogstools.meshlib.Boundary method) (ogstools.meshlib.boundary.Boundary method) (ogstools.meshlib.boundary.Layer method) (ogstools.meshlib.Layer method) dirichlet_time (ogstools.logparser.regexes.DirichletTime attribute) DirichletTime (class in ogstools.logparser.regexes) Display (class in ogstools.ogs6py.display) distance_in_profile() (in module ogstools.meshlib) (in module ogstools.meshlib.data_processing) distance_in_segments() (in module ogstools.meshlib) (in module ogstools.meshlib.data_processing) dpi (ogstools.plot.plot_setup.PlotSetup attribute) draw_plot() (in module ogstools.plot.contourplots) dx (ogstools.logparser.regexes.ComponentConvergenceCriterion attribute) (ogstools.logparser.regexes.TimeStepConvergenceCriterion attribute) dx_x (ogstools.logparser.regexes.ComponentConvergenceCriterion attribute) (ogstools.logparser.regexes.TimeStepConvergenceCriterion attribute)

E

effective_pressure() (in module ogstools.variables.tensor_math) eigenvalues (ogstools.variables.matrix.Matrix property) eigenvalues() (in module ogstools.variables.tensor_math) eigenvectors (ogstools.variables.matrix.Matrix property) eigenvectors() (in module ogstools.variables.tensor_math) elastic_energy (ogstools.logparser.regexes.PhaseFieldEnergyVar attribute) element_edges() (in module ogstools.plot.features)

ErrorMessage (class in ogstools.logparser.regexes) ErrorType (class in ogstools.logparser.regexes) execution_time (ogstools.logparser.regexes.SimulationExecutionTime attribute) extract_cell_boundary_conditions() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools) extract_point_boundary_conditions() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools)

F

factor (ogstools.physics.nuclearwasteheat.nuclearwaste.NuclearWaste attribute) filenames() (ogstools.meshlib.boundary_set.BoundarySet method) (ogstools.meshlib.boundary_set.LayerSet method) (ogstools.meshlib.LayerSet method) filepath (ogstools.meshlib.Mesh attribute) (ogstools.meshlib.mesh.Mesh attribute) fill_ogs_context() (in module ogstools.logparser) (in module ogstools.logparser.common_ogs_analyses) find_cells_at_nodes() (in module ogstools.msh2vtu) find_connected_domain_cells() (in module ogstools.msh2vtu)

flow_direction (ogstools.meshlib.gmsh_meshing.Groundwater attribute) fluid_pressure_criterion() (in module ogstools.variables.mesh_dependent) fontsize (ogstools.plot.plot_setup.PlotSetup attribute) frame (ogstools.meshlib.boundary.Raster attribute) (ogstools.meshlib.Raster attribute) frobenius_norm() (in module ogstools.variables.tensor_math) from_dict() (ogstools.plot.plot_setup.PlotSetup class method) from_pandas() (ogstools.meshlib.boundary_set.LayerSet class method) (ogstools.meshlib.LayerSet class method) from_variable() (ogstools.variables.variable.Variable class method) func() (ogstools.variables.variable.Variable method)

G

Gaussian2D() (in module ogstools.meshlib) (in module ogstools.meshlib.boundary_subset) gen_bhe_mesh() (in module ogstools.meshlib.gmsh_meshing) gen_bhe_mesh_gmsh() (in module ogstools.meshlib.gmsh_meshing) GenericCodePoint (class in ogstools.logparser.regexes) Geo (class in ogstools.ogs6py.geo) get_child_tag() (ogstools.ogs6py.build_tree.BuildTree static method) get_child_tag_for_type() (ogstools.ogs6py.build_tree.BuildTree static method) get_cmap_norm() (in module ogstools.plot.utils) get_data_aspect() (in module ogstools.plot.utils) get_dimension() (in module ogstools.feflowlib.tools) get_label() (ogstools.variables.variable.Variable method) get_mask() (ogstools.variables.variable.Variable method) get_material_properties() (in module ogstools.feflowlib.tools) get_material_properties_of_CT_model() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools)

get_material_properties_of_HT_model() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools) get_output_unit() (ogstools.variables.variable.Variable method) get_projection() (in module ogstools.plot.utils) get_rows_cols() (in module ogstools.plot.utils) get_species() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools) get_specific_surface() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools) get_style_cycler() (in module ogstools.plot.utils) get_ticklabels() (in module ogstools.plot.contourplots) grid_convergence() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) Groundwater (class in ogstools.meshlib.gmsh_meshing)

H

H5DataItem (class in ogstools.meshlib.xdmf_reader) has_fast_access() (ogstools.meshlib.xdmf_reader.XDMFReader method) heat() (ogstools.physics.nuclearwasteheat.nuclearwaste.NuclearWaste method) (ogstools.physics.nuclearwasteheat.nuclearwaste.Repository method) helpFormat (class in ogstools.feflowlib) (class in ogstools.feflowlib.tools)

hydro_thermal() (in module ogstools.feflowlib) (in module ogstools.feflowlib.templates) hydrostatic_component (ogstools.variables.matrix.Matrix property) hydrostatic_component() (in module ogstools.variables.tensor_math)

I

identity() (in module ogstools.variables.tensor_math) Info (class in ogstools.logparser.regexes) interp_points() (in module ogstools.meshlib) (in module ogstools.meshlib.data_processing) invariant_1 (ogstools.variables.matrix.Matrix property) invariant_1() (in module ogstools.variables.tensor_math) invariant_2 (ogstools.variables.matrix.Matrix property) invariant_2() (in module ogstools.variables.tensor_math) invariant_3 (ogstools.variables.matrix.Matrix property) invariant_3() (in module ogstools.variables.tensor_math)

invert_colorbar (ogstools.plot.plot_setup.PlotSetup attribute) ip_tesselated() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) is_mask() (ogstools.variables.variable.Variable method) isolation_layer_id (ogstools.meshlib.gmsh_meshing.Groundwater attribute) Iteration (class in ogstools.logparser.regexes) iteration_number (ogstools.logparser.regexes.Iteration attribute) (ogstools.logparser.regexes.IterationTime attribute) iteration_time (ogstools.logparser.regexes.IterationTime attribute) IterationTime (class in ogstools.logparser.regexes)

J

jupyter_to_html() (in module ogstools.workflow) (in module ogstools.workflow.jupyter_conversion)

jupytext_to_jupyter() (in module ogstools.workflow) (in module ogstools.workflow.jupyter_conversion) justified_labels() (in module ogstools.plot.utils)

L

label_spatial_axes() (in module ogstools.plot.utils) label_split (ogstools.plot.plot_setup.PlotSetup attribute) Layer (class in ogstools.meshlib) (class in ogstools.meshlib.boundary) layer_boundaries() (in module ogstools.plot.features) layer_to_simplified_mesh() (in module ogstools.meshlib.region.region) LayerSet (class in ogstools.meshlib) (class in ogstools.meshlib.boundary_set) layout (ogstools.plot.plot_setup.PlotSetup attribute) level_boundaries() (in module ogstools.plot.levels) line (ogstools.logparser.regexes.Log attribute) linear_solver_time (ogstools.logparser.regexes.LinearSolverTime attribute) LinearSolverTime (class in ogstools.logparser.regexes)

linesample() (in module ogstools.plot.lineplots) linesample_contourf() (in module ogstools.plot.lineplots) linestyle (ogstools.variables.variable.Variable attribute) linewidth (ogstools.plot.plot_setup.PlotSetup attribute) LinSolvers (class in ogstools.ogs6py.linsolvers) liquid_flow() (in module ogstools.feflowlib) (in module ogstools.feflowlib.templates) LocalCoordinateSystem (class in ogstools.ogs6py.local_coordinate_system) LocationFrame (class in ogstools.meshlib) (class in ogstools.meshlib.boundary) Log (class in ogstools.logparser.regexes) log_fit() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) log_scaled (ogstools.plot.plot_setup.PlotSetup attribute)

M

magnitude (ogstools.variables.matrix.Matrix property) (ogstools.variables.variable.Variable property) (ogstools.variables.vector.Vector property) mask (ogstools.variables.variable.Variable attribute) mask_used() (ogstools.variables.variable.Variable method) material_id (ogstools.meshlib.boundary.Layer attribute) (ogstools.meshlib.boundary_subset.Surface property) (ogstools.meshlib.Layer attribute) (ogstools.meshlib.Surface property) material_names (ogstools.plot.plot_setup.PlotSetup attribute) materials_in_CT() (in module ogstools.feflowlib.tools) materials_in_HT() (in module ogstools.feflowlib.tools) materials_in_liquid_flow() (in module ogstools.feflowlib.tools) materials_in_steady_state_diffusion() (in module ogstools.feflowlib.tools) Matrix (class in ogstools.variables.matrix) matrix_trace() (in module ogstools.variables.tensor_math) max_ax_aspect (ogstools.plot.plot_setup.PlotSetup attribute) max_iter (ogstools.feflowlib.tools.RequestParams attribute) mean (ogstools.variables.matrix.Matrix property) mean() (in module ogstools.variables.tensor_math) Media (class in ogstools.ogs6py.media) median_exponent() (in module ogstools.plot.levels) medium (ogstools.ogs6py.properties.Value attribute) Mesh (class in ogstools.meshlib) (class in ogstools.meshlib.mesh) (class in ogstools.ogs6py.mesh) mesh() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) mesh_dependent (ogstools.variables.variable.Variable attribute) mesh_read_time (ogstools.logparser.regexes.MeshReadTime attribute) MeshReadTime (class in ogstools.logparser.regexes) MeshSeries (class in ogstools.meshlib) (class in ogstools.meshlib.mesh_series) message (ogstools.logparser.regexes.CriticalMessage attribute) (ogstools.logparser.regexes.ErrorMessage attribute) (ogstools.logparser.regexes.GenericCodePoint attribute) (ogstools.logparser.regexes.WarningMessage attribute) min_ax_aspect (ogstools.plot.plot_setup.PlotSetup attribute) model (ogstools.feflowlib.tools.RequestParams attribute) module ogstools ogstools.definitions ogstools.feflowlib ogstools.feflowlib.templates ogstools.feflowlib.tools ogstools.logparser ogstools.logparser.common_ogs_analyses ogstools.logparser.log_parser ogstools.logparser.regexes ogstools.meshlib ogstools.meshlib.boundary ogstools.meshlib.boundary_set ogstools.meshlib.boundary_subset ogstools.meshlib.data_processing ogstools.meshlib.geo ogstools.meshlib.gmsh_meshing ogstools.meshlib.ip_mesh ogstools.meshlib.mesh ogstools.meshlib.mesh_series ogstools.meshlib.refine_mesh ogstools.meshlib.region ogstools.meshlib.region.region ogstools.meshlib.shape_meshing ogstools.meshlib.shp2msh_cli ogstools.meshlib.xdmf_reader ogstools.msh2vtu ogstools.msh2vtu.tools ogstools.msh2vtu.tools.result2bc ogstools.ogs6py ogstools.ogs6py.build_tree ogstools.ogs6py.curves ogstools.ogs6py.display ogstools.ogs6py.geo ogstools.ogs6py.linsolvers ogstools.ogs6py.local_coordinate_system ogstools.ogs6py.media ogstools.ogs6py.mesh ogstools.ogs6py.nonlinsolvers ogstools.ogs6py.parameters ogstools.ogs6py.processes ogstools.ogs6py.processvars ogstools.ogs6py.project ogstools.ogs6py.properties ogstools.ogs6py.python_script ogstools.ogs6py.timeloop ogstools.physics ogstools.physics.nuclearwasteheat ogstools.physics.nuclearwasteheat.defaults ogstools.physics.nuclearwasteheat.nuclearwaste ogstools.plot ogstools.plot.contourplots ogstools.plot.features ogstools.plot.levels ogstools.plot.lineplots ogstools.plot.plot_setup ogstools.plot.plot_setup_defaults ogstools.plot.shared ogstools.plot.utils ogstools.plot.vectorplots ogstools.studies ogstools.studies.convergence ogstools.studies.convergence.convergence ogstools.studies.convergence.study ogstools.variables ogstools.variables.custom_colormaps ogstools.variables.matrix ogstools.variables.mesh_dependent ogstools.variables.tensor_math ogstools.variables.unit_registry ogstools.variables.variable ogstools.variables.vector ogstools.workflow ogstools.workflow.jupyter_conversion

mpi_process (ogstools.logparser.regexes.MPIProcess attribute) mpi_processes() (in module ogstools.logparser.log_parser) MPIProcess (class in ogstools.logparser.regexes) msh2vtu() (in module ogstools.msh2vtu) my_remove_orphaned_nodes() (in module ogstools.msh2vtu)

N

name (ogstools.physics.nuclearwasteheat.nuclearwaste.NuclearWaste attribute) nice_num() (in module ogstools.plot.levels) nice_range() (in module ogstools.plot.levels) NonLinSolvers (class in ogstools.ogs6py.nonlinsolvers) NuclearWaste (class in ogstools.physics.nuclearwasteheat.nuclearwaste)

nuclide_powers (ogstools.physics.nuclearwasteheat.nuclearwaste.NuclearWaste attribute) num_bundles (ogstools.physics.nuclearwasteheat.nuclearwaste.NuclearWaste attribute) num_levels (ogstools.plot.plot_setup.PlotSetup attribute) num_streamline_interp_pts (ogstools.plot.plot_setup.PlotSetup attribute) num_subdivisions (ogstools.meshlib.boundary.Layer attribute) (ogstools.meshlib.Layer attribute)

O

octahedral_shear (ogstools.variables.matrix.Matrix property) octahedral_shear() (in module ogstools.variables.tensor_math) ogs_regexes() (in module ogstools.logparser) (in module ogstools.logparser.regexes) ogstools module ogstools.definitions module ogstools.feflowlib module ogstools.feflowlib.templates module ogstools.feflowlib.tools module ogstools.logparser module ogstools.logparser.common_ogs_analyses module ogstools.logparser.log_parser module ogstools.logparser.regexes module ogstools.meshlib module ogstools.meshlib.boundary module ogstools.meshlib.boundary_set module ogstools.meshlib.boundary_subset module ogstools.meshlib.data_processing module ogstools.meshlib.geo module ogstools.meshlib.gmsh_meshing module ogstools.meshlib.ip_mesh module ogstools.meshlib.mesh module ogstools.meshlib.mesh_series module ogstools.meshlib.refine_mesh module ogstools.meshlib.region module ogstools.meshlib.region.region module ogstools.meshlib.shape_meshing module ogstools.meshlib.shp2msh_cli module ogstools.meshlib.xdmf_reader module ogstools.msh2vtu module ogstools.msh2vtu.tools module ogstools.msh2vtu.tools.result2bc module ogstools.ogs6py module ogstools.ogs6py.build_tree module ogstools.ogs6py.curves module ogstools.ogs6py.display module ogstools.ogs6py.geo module ogstools.ogs6py.linsolvers module ogstools.ogs6py.local_coordinate_system module ogstools.ogs6py.media module ogstools.ogs6py.mesh module

ogstools.ogs6py.nonlinsolvers module ogstools.ogs6py.parameters module ogstools.ogs6py.processes module ogstools.ogs6py.processvars module ogstools.ogs6py.project module ogstools.ogs6py.properties module ogstools.ogs6py.python_script module ogstools.ogs6py.timeloop module ogstools.physics module ogstools.physics.nuclearwasteheat module ogstools.physics.nuclearwasteheat.defaults module ogstools.physics.nuclearwasteheat.nuclearwaste module ogstools.plot module ogstools.plot.contourplots module ogstools.plot.features module ogstools.plot.levels module ogstools.plot.lineplots module ogstools.plot.plot_setup module ogstools.plot.plot_setup_defaults module ogstools.plot.shared module ogstools.plot.utils module ogstools.plot.vectorplots module ogstools.studies module ogstools.studies.convergence module ogstools.studies.convergence.convergence module ogstools.studies.convergence.study module ogstools.variables module ogstools.variables.custom_colormaps module ogstools.variables.matrix module ogstools.variables.mesh_dependent module ogstools.variables.tensor_math module ogstools.variables.unit_registry module ogstools.variables.variable module ogstools.variables.vector module ogstools.workflow module ogstools.workflow.jupyter_conversion module outline() (in module ogstools.plot) (in module ogstools.plot.features) output_name (ogstools.variables.variable.Variable attribute) output_time (ogstools.logparser.regexes.TimeStepOutputTime attribute) output_unit (ogstools.variables.variable.Variable attribute)

P

p_fluid() (in module ogstools.meshlib.geo) (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) padded() (in module ogstools.plot.utils) Parameters (class in ogstools.ogs6py.parameters) parse_file() (in module ogstools.logparser) (in module ogstools.logparser.log_parser) PhaseFieldEnergyVar (class in ogstools.logparser.regexes) plot_contourf() (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) plot_convergence() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) plot_convergence_error_evolution() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) plot_convergence_errors() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) plot_convergence_order_evolution() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) plot_domain_aggregate() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) plot_linesample() (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) plot_linesample_contourf() (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) plot_probe() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) plot_quiver() (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method)

plot_streamlines() (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) plot_time_slice() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) PlotSetup (class in ogstools.plot.plot_setup) points_and_cells() (in module ogstools.feflowlib) populate_tree() (ogstools.ogs6py.build_tree.BuildTree static method) pre_post_check() (in module ogstools.logparser.common_ogs_analyses) pressure_work (ogstools.logparser.regexes.PhaseFieldEnergyVar attribute) print_info() (in module ogstools.msh2vtu) probe() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) process (ogstools.logparser.regexes.TimeStepSolutionTime attribute) (ogstools.logparser.regexes.TimeStepSolutionTimeCoupledScheme attribute) process_with_units (ogstools.variables.variable.Variable attribute) Processes (class in ogstools.ogs6py.processes) ProcessVars (class in ogstools.ogs6py.processvars) Project (class in ogstools.ogs6py) (class in ogstools.ogs6py.project) Property (class in ogstools.ogs6py.properties) property (ogstools.ogs6py.properties.PropertySet attribute) property_dataframe() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) PropertySet (class in ogstools.ogs6py.properties) PVDDataItems (class in ogstools.meshlib.mesh_series) PythonScript (class in ogstools.ogs6py.python_script)

Q

qp_ratio (ogstools.variables.matrix.Matrix property) qp_ratio() (in module ogstools.variables.tensor_math)

quiver() (in module ogstools.plot) (in module ogstools.plot.vectorplots)

R

Raster (class in ogstools.meshlib) (class in ogstools.meshlib.boundary) rawdata_file() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) rawdata_path (ogstools.meshlib.xdmf_reader.DataItem attribute) rawdata_path() (ogstools.meshlib.xdmf_reader.XDMFReader method) read() (ogstools.meshlib.Mesh class method) (ogstools.meshlib.mesh.Mesh class method) read_data() (ogstools.meshlib.xdmf_reader.XDMFReader method) read_interp() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) read_shape() (in module ogstools.meshlib) (in module ogstools.meshlib.shape_meshing) (ogstools.meshlib.Mesh class method) (ogstools.meshlib.mesh.Mesh class method) rect() (in module ogstools.meshlib) (in module ogstools.meshlib.gmsh_meshing) refine() (in module ogstools.meshlib.refine_mesh) RegionSet (class in ogstools.meshlib.region) (class in ogstools.meshlib.region.region) rel_tol (ogstools.feflowlib.tools.RequestParams attribute) remesh_with_triangle() (in module ogstools.meshlib.gmsh_meshing) remove_bulk_ids() (in module ogstools.feflowlib.tools) remove_element() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) replace() (ogstools.variables.variable.Variable method) replace_block_by_include() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method)

replace_medium_property_value() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) replace_mesh() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) replace_parameter() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) replace_parameter_value() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) replace_phase_property_value() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) replace_text() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) Repository (class in ogstools.physics.nuclearwasteheat.nuclearwaste) RequestParams (class in ogstools.feflowlib.tools) resample() (in module ogstools.studies.convergence.convergence) reset() (ogstools.plot.plot_setup.PlotSetup method) resolution (ogstools.meshlib.boundary.Raster attribute) (ogstools.meshlib.Raster attribute) restart() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) richardson_extrapolation() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.convergence) run_convergence_study() (in module ogstools.studies.convergence) (in module ogstools.studies.convergence.study) run_model() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method)

S

sample_polyline() (in module ogstools.meshlib) (in module ogstools.meshlib.data_processing) save_animation() (in module ogstools.plot.utils) Scalar (class in ogstools.variables.variable) select_item() (ogstools.meshlib.xdmf_reader.XDMFReader method) selected_values() (ogstools.meshlib.xdmf_reader.H5DataItem method) set() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method) set_constitutive_relation() (ogstools.ogs6py.processes.Processes method) set_ic() (ogstools.ogs6py.processvars.ProcessVars method) set_process() (ogstools.ogs6py.processes.Processes method) set_pyscript() (ogstools.ogs6py.python_script.PythonScript method) set_stepping() (ogstools.ogs6py.timeloop.TimeLoop method) setup_prj_file() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools) shape_on_top() (in module ogstools.plot) (in module ogstools.plot.features) show_element_edges (ogstools.plot.plot_setup.PlotSetup attribute)

show_region_bounds (ogstools.plot.plot_setup.PlotSetup attribute) SimulationExecutionTime (class in ogstools.logparser.regexes) spatial_quantity() (in module ogstools.plot.shared) species_list (ogstools.feflowlib.tools.RequestParams attribute) steady_state_diffusion() (in module ogstools.feflowlib) (in module ogstools.feflowlib.templates) step_size (ogstools.logparser.regexes.TimeStepStartTime attribute) step_start_time (ogstools.logparser.regexes.TimeStepStartTime attribute) streamlines() (in module ogstools.plot) (in module ogstools.plot.vectorplots) subplot() (in module ogstools.plot) (in module ogstools.plot.contourplots) Surface (class in ogstools.meshlib) (class in ogstools.meshlib.boundary_subset) surface_energy (ogstools.logparser.regexes.PhaseFieldEnergyVar attribute) sym_tensor_to_mat() (in module ogstools.variables.tensor_math) symbol (ogstools.ogs6py.properties.Property attribute) (ogstools.variables.variable.Variable attribute)

T

tessellate() (in module ogstools.meshlib.ip_mesh) tick_length (ogstools.plot.plot_setup.PlotSetup attribute) tick_pad (ogstools.plot.plot_setup.PlotSetup attribute) time_deposit (ogstools.physics.nuclearwasteheat.nuclearwaste.NuclearWaste attribute) time_deposit() (ogstools.physics.nuclearwasteheat.nuclearwaste.Repository method) time_interim (ogstools.physics.nuclearwasteheat.nuclearwaste.NuclearWaste attribute) time_of_max() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) time_of_min() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) time_step (ogstools.logparser.regexes.TimeStep attribute) (ogstools.logparser.regexes.TimeStepFinishedTime attribute) (ogstools.logparser.regexes.TimeStepOutputTime attribute) (ogstools.logparser.regexes.TimeStepSolutionTime attribute) (ogstools.logparser.regexes.TimeStepSolutionTimeCoupledScheme attribute) (ogstools.logparser.regexes.TimeStepStartTime attribute) time_step_finished_time (ogstools.logparser.regexes.TimeStepFinishedTime attribute) time_step_solution_time (ogstools.logparser.regexes.TimeStepSolutionTime attribute) (ogstools.logparser.regexes.TimeStepSolutionTimeCoupledScheme attribute) time_step_vs_iterations() (in module ogstools.logparser) (in module ogstools.logparser.common_ogs_analyses) TimeLoop (class in ogstools.ogs6py.timeloop) TimeStep (class in ogstools.logparser.regexes) TimeStepConvergenceCriterion (class in ogstools.logparser.regexes) TimeStepFinishedTime (class in ogstools.logparser.regexes) TimeStepOutputTime (class in ogstools.logparser.regexes) timesteps (ogstools.meshlib.mesh_series.MeshSeries property) (ogstools.meshlib.MeshSeries property) TimeStepSolutionTime (class in ogstools.logparser.regexes) TimeStepSolutionTimeCoupledScheme (class in ogstools.logparser.regexes) TimeStepStartTime (class in ogstools.logparser.regexes) timevalues() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) title (ogstools.ogs6py.properties.Property attribute)

to_boundary() (in module ogstools.meshlib.region) (in module ogstools.meshlib.region.region) to_ip_mesh() (in module ogstools.meshlib) (in module ogstools.meshlib.ip_mesh) (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) to_ip_point_cloud() (in module ogstools.meshlib) (in module ogstools.meshlib.ip_mesh) (ogstools.meshlib.Mesh method) (ogstools.meshlib.mesh.Mesh method) to_region_prism() (in module ogstools.meshlib) (in module ogstools.meshlib.region) (in module ogstools.meshlib.region.region) to_region_simplified() (in module ogstools.meshlib) (in module ogstools.meshlib.region) (in module ogstools.meshlib.region.region) to_region_tetraeder() (in module ogstools.meshlib) (in module ogstools.meshlib.region) (in module ogstools.meshlib.region.region) to_region_voxel() (in module ogstools.meshlib) (in module ogstools.meshlib.region) (in module ogstools.meshlib.region.region) top (ogstools.meshlib.boundary.Layer attribute) (ogstools.meshlib.Layer attribute) total_energy (ogstools.logparser.regexes.PhaseFieldEnergyVar attribute) trace (ogstools.variables.matrix.Matrix property) trace() (in module ogstools.variables.tensor_math) transform() (ogstools.variables.variable.Variable method) type (ogstools.logparser.regexes.Log attribute) type_name (ogstools.variables.variable.Variable property) type_str() (ogstools.logparser.regexes.CriticalType static method) (ogstools.logparser.regexes.ErrorType static method) (ogstools.logparser.regexes.Info static method) (ogstools.logparser.regexes.Log static method) (ogstools.logparser.regexes.WarningType static method)

U

unit (ogstools.ogs6py.properties.Property attribute)

update_font_sizes() (in module ogstools.plot.utils) update_geometry() (in module ogstools.feflowlib)

V

Value (class in ogstools.ogs6py.properties) value (ogstools.ogs6py.properties.Property attribute) (ogstools.ogs6py.properties.Value attribute) values() (ogstools.meshlib.mesh_series.MeshSeries method) (ogstools.meshlib.MeshSeries method) Variable (class in ogstools.variables.variable)

Vector (class in ogstools.variables.vector) vector_norm() (in module ogstools.variables.vector) VectorList (class in ogstools.variables.vector) vmax (ogstools.plot.plot_setup.PlotSetup attribute) vmin (ogstools.plot.plot_setup.PlotSetup attribute) von_Mises (ogstools.variables.matrix.Matrix property) von_mises() (in module ogstools.variables.tensor_math)

W

WarningMessage (class in ogstools.logparser.regexes) WarningType (class in ogstools.logparser.regexes) waste (ogstools.physics.nuclearwasteheat.nuclearwaste.Repository attribute) write_input() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method)

write_mesh_of_combined_properties() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools) write_point_boundary_conditions() (in module ogstools.feflowlib) (in module ogstools.feflowlib.tools) write_property_latextable() (ogstools.ogs6py.Project method) (ogstools.ogs6py.project.Project method)

X

x (ogstools.logparser.regexes.ComponentConvergenceCriterion attribute) (ogstools.logparser.regexes.TimeStepConvergenceCriterion attribute) (ogstools.meshlib.gmsh_meshing.BHE attribute) XDMFReader (class in ogstools.meshlib.xdmf_reader)

xmax (ogstools.meshlib.boundary.LocationFrame attribute) (ogstools.meshlib.LocationFrame attribute) xmin (ogstools.meshlib.boundary.LocationFrame attribute) (ogstools.meshlib.LocationFrame attribute) XMLDataItem (class in ogstools.meshlib.xdmf_reader)

Y

y (ogstools.meshlib.gmsh_meshing.BHE attribute) ymax (ogstools.meshlib.boundary.LocationFrame attribute) (ogstools.meshlib.LocationFrame attribute)

ymin (ogstools.meshlib.boundary.LocationFrame attribute) (ogstools.meshlib.LocationFrame attribute)

Z

z_begin (ogstools.meshlib.gmsh_meshing.BHE attribute)

z_end (ogstools.meshlib.gmsh_meshing.BHE attribute)